Additional materials

This page contains additional materials used during my research. Furthermore, there are some image sets that are not available in their original location, thus an alternative download link is provider here.

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Microarray image sets

Data set	Number of images	Raw size	Download link	Original download link
ApoA1	32	66.4 MB	download	download
Arizona	6	694.9 MB	download	download
IBB	44	1.03 GB	download	download
ISREC	14	26.7 MB	download	dead
Omnibus (LM)	25	2.5 GB	download	download
Omnibus (HM)	25	2.5 GB	download	download
Stanford	40	396 MB	download	dead
Yeast	109	219 MB	download	download
YuLou or MicroZip	3	40.7 MB	download	dead

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Sun image sets

Data set	Number of images	Raw size	Download link	Original download link
Medical	48	94.6 MB	download	download
Natural	36	85.1 MB	download	download
Other	15	10.5 MB	download	download

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mini-MIAS image set

Data set	Number of images	Raw size	Download link	Original download link
mini-MIAS	322	323 MB	download	download

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Software

• MAFCO (MAF COmpressor - a compression tool for MAF files)
• SACO (Sequence Alignment COmpressor - a lossy compression tool for the sequences alignments found in the MAF files.)
• MENT (Microarray comprEssioN Tools - set of compression tools for microarray images)
• JPEG-LS codec (version 2.2)
• JJ2000 codec (version 5.1)
• Micro3DEnc codec (version 1.0)

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LaTeX Workshops

• Presentation (video)- agap2IT (October 2015)
• Presentation - ESTGA (December 2014)
• Presentation - UA (October 2013)

©2009-2015 University of Aveiro
Last Update 2015/31/10 - Luís M. O. Matos